ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: let-7
source: miRBase, original name: xtr-let-7f (MI0004887)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGATTGTATAGTT miRNA* CTATACAGTTTACTGTCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
TGCAGGATGAGGTAGTAGATTGTATAGTTTTGGGGTCACACCCGATCTGGGAGATAACTATACAGTTTACTGTCTTTCCTGCG
dot-bracket secondary structure
.((((((.(((..(((((((((((((((((((((......)))))..........))))))))))))))))..))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
deep sequencing data evidence
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
TGCAGGATGAGGTAGTAGATTGTATAGTTTTGGGGTCACACCCGATCTGGGAGATAACTATACAGTTTACTGTCTTTCCTGCG
dot-bracket secondary structure
.((((((.(((..(((((((((((((((((((((......)))))..........))))))))))))))))..))))))))).
SIMILARITIES| miRBase mdo-let-7f-2: 5e-30 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 9e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
deep sequencing data evidence
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
