ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: mir-1
source: miRBase, original name: xtr-mir-1a-1 (MI0004789)
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGTA miRNA* CATACTTCTTTATGTACCCATA mismatches: 1 bulges: 1 |
pre-miRNA
ACCTGTTTGGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTATCAGG
dot-bracket secondary structure
.((((...(((((((((((((((((((((..(((((..............))))).)))))))))))))))))))))...))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
ACCTGTTTGGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTATCAGG
dot-bracket secondary structure
.((((...(((((((((((((((((((((..(((((..............))))).)))))))))))))))))))))...))))
SIMILARITIES| miRBase eca-mir-1: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 4e-37 |
Identical with: cfa-mir-1-2 from miRBase (MNEST026614) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
