ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: mir-27
source: miRBase, original name: xtr-mir-27b (MI0004810)
SEQUENCE & STRUCTURE| miRNA TTCACAGTGGCTAAGTTCTGC miRNA* AGAGCTTAGCTGATTGGTGAACA mismatches: 2 bulges: 2 |
pre-miRNA
ACCTTTCTACCAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGATTCCCTCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAGGGC
dot-bracket secondary structure
.(((((((....((((((((((((((((((....((((((((.((.........)).))))))))..))))))))))))))))))..)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence
ACCTTTCTACCAAGGTGCAGAGCTTAGCTGATTGGTGAACAGTGATTGATTCCCTCTTTGTTCACAGTGGCTAAGTTCTGCACCTGAAGAGAGGGC
dot-bracket secondary structure
.(((((((....((((((((((((((((((....((((((((.((.........)).))))))))..))))))))))))))))))..)))))))..
SIMILARITIES| miRBase gga-mir-27b: 1e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-27: 2e-30 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
