ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: mir-142
source: miRBase, original name: xtr-mir-142-2 (MI0004843)
SEQUENCE & STRUCTURE| miRNA CATAAAGTAGAAAGCACTAC miRNA* AGTGTTTCCTACTTTATGGA mismatches: 1 bulges: 0 |
pre-miRNA
CAGTGCAGCCACCCATAAAGTAGAAAGCACTACTAGACAGGACTGAACGCTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGGG
dot-bracket secondary structure
(((((((..((.(((((((((((.(((((((((.((...(.......).))))))))))).))))))))))).))..)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
CAGTGCAGCCACCCATAAAGTAGAAAGCACTACTAGACAGGACTGAACGCTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGGG
dot-bracket secondary structure
(((((((..((.(((((((((((.(((((((((.((...(.......).))))))))))).))))))))))).))..)))))))..
SIMILARITIES| miRBase xla-mir-142: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-142: 6e-27 |
Identical with: xtr-mir-142-1 from miRBase (MNEST025789) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
