ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: mir-8
source: miRBase, original name: xtr-mir-200a (MI0004945)
SEQUENCE & STRUCTURE| miRNA TAACACTGTCTGGTAACGATGT miRNA* ATCTTACTAGACAGTGCTGGA mismatches: 1 bulges: 1 |
pre-miRNA
TGGTCCTCTATGGACATCTTACTAGACAGTGCTGGATTTATTTTATCTTTTCTAACACTGTCTGGTAACGATGTTTAAAGAGTGAGCCA
dot-bracket secondary structure
.((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
deep sequencing data evidence
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
TGGTCCTCTATGGACATCTTACTAGACAGTGCTGGATTTATTTTATCTTTTCTAACACTGTCTGGTAACGATGTTTAAAGAGTGAGCCA
dot-bracket secondary structure
.((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).)).
SIMILARITIES| miRBase gga-mir-200a: 8e-26 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 1e-21 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
deep sequencing data evidence
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
