ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: miR-427
source: miRBase, original name: xtr-mir-427-2 (MI0006269)
SEQUENCE & STRUCTURE| miRNA GAAAGTGCTTTCTGTTTTGGGCG miRNA* CCCAAAACGGGGCTCTCTCTT mismatches: 3 bulges: 2 |
pre-miRNA
AGCACCCAAAACGGGGCTCTCTCTTGTGTATGAATTATGGTGAGAAAGTGCTTTCTGTTTTGGGCGTTGT
dot-bracket secondary structure
(((.(((((((((((((.((.(((..((((.....))).)..))).)).)))..)))))))))).)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
AGCACCCAAAACGGGGCTCTCTCTTGTGTATGAATTATGGTGAGAAAGTGCTTTCTGTTTTGGGCGTTGT
dot-bracket secondary structure
(((.(((((((((((((.((.(((..((((.....))).)..))).)).)))..)))))))))).)))..
SIMILARITIES| miRBase xtr-mir-427-1: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: xtr-mir-427-1 from miRBase (MNEST025856) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
