ABOUT THIS RECORDspecies: Xenopus tropicalis
miRNA family: miR-427
source: miRBase, original name: xtr-mir-427-3 (MI0006270)
SEQUENCE & STRUCTURE| miRNA GAAAGTGCTTTCTGTTTTGGGCG miRNA* CCCAAAACGGGGCTCTCTCTT mismatches: 3 bulges: 2 |
pre-miRNA
AGCACCCAAAACGGGGCTCTCTCTTGTGCATGAATTATGGTGAGAAAGTGCTTTCTGTTTTGGGCGTTGT
dot-bracket secondary structure
(((.(((((((((((((.((.(((..(.((((...)))))..))).)).)))..)))))))))).)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
AGCACCCAAAACGGGGCTCTCTCTTGTGCATGAATTATGGTGAGAAAGTGCTTTCTGTTTTGGGCGTTGT
dot-bracket secondary structure
(((.(((((((((((((.((.(((..(.((((...)))))..))).)).)))..)))))))))).)))..
SIMILARITIES| miRBase xtr-mir-427-1: 7e-32 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Tang GQ, Maxwell ES, Genome Res. 18:104-112(2008)., "Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation"
