ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: let-7
source: miRBase, original name: gga-let-7d (MI0001232)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGGTAGTGGGTTGCATAGT miRNA* TATACAACCTGCTGCCTTTCT mismatches: 4 bulges: 0 |
pre-miRNA
ATTGGGCTCCTAGGAAGAGGTAGTGGGTTGCATAGTTTTAGGGCAGGGATTTTGCTCACAAGGAGGTAACTATACAACCTGCTGCCTTTCTTAGGGCTTT
ATT
dot-bracket secondary structure
...((((.(((((((.(((((((..(((((.((((((...((((((.....)))))).(.....)..)))))).)))))..)))))))))))))))))).
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
ATTGGGCTCCTAGGAAGAGGTAGTGGGTTGCATAGTTTTAGGGCAGGGATTTTGCTCACAAGGAGGTAACTATACAACCTGCTGCCTTTCTTAGGGCTTT
ATT
dot-bracket secondary structure
...((((.(((((((.(((((((..(((((.((((((...((((((.....)))))).(.....)..)))))).)))))..)))))))))))))))))).
...
SIMILARITIES| miRBase mdo-let-7d: 5e-43 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 9e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
