ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: let-7
source: miRBase, original name: gga-let-7f (MI0001233)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGATTGTATAGTT miRNA* CTATACAATCTATTGCCTTCCC mismatches: 2 bulges: 0 |
pre-miRNA
TCAGAGTGAGGTAGTAGATTGTATAGTTGTAGGGTAGTTATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGA
dot-bracket secondary structure
((((.(..(((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
TCAGAGTGAGGTAGTAGATTGTATAGTTGTAGGGTAGTTATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGA
dot-bracket secondary structure
((((.(..(((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))..)))))
SIMILARITIES| miRBase tgu-let-7f: 3e-44 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 5e-43 |
Identical with: tgu-let-7f from miRBase (MNEST026384) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
