ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: let-7
source: miRBase, original name: gga-let-7j (MI0001262)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* CTATACAGTCTATTGCCTTCCT mismatches: 4 bulges: 0 |
pre-miRNA
GTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATTCTGTCCCATTTCAGGTGATAACTATACAGTCTATTGCCTTCCTTAA
dot-bracket secondary structure
(..(((((((((..(((((((((.(((((((.((...)).))))))).........)))))))))..)))))))))..)....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
GTGAGGTAGTAGGTTGTATAGTTTGGTGGGAGGGATTCTGTCCCATTTCAGGTGATAACTATACAGTCTATTGCCTTCCTTAA
dot-bracket secondary structure
(..(((((((((..(((((((((.(((((((.((...)).))))))).........)))))))))..)))))))))..)....
SIMILARITIES| miRBase tgu-let-7a-4: 9e-35 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
