ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-1
source: miRBase, original name: gga-mir-1a-2 (MI0001196)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGTA miRNA* CATACTTCTTTATGTACCCATA mismatches: 2 bulges: 1 |
pre-miRNA
ACCTGCTCAGAGCACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGCAGGC
dot-bracket secondary structure
.((((((.((((.((((((((((((((((..(((((..............))))).)))))))))))))))).)))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
ACCTGCTCAGAGCACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGCAGGC
dot-bracket secondary structure
.((((((.((((.((((((((((((((((..(((((..............))))).)))))))))))))))).)))).)))))).
SIMILARITIES| miRBase hsa-mir-1-2: 6e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 6e-30 |
Identical with: cfa-mir-1-2 from miRBase (MNEST026614) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
