ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-29
source: miRBase, original name: gga-mir-29a (MI0001166)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCGGTT miRNA* CTGATTTCTTTTGGTGTTCAGA mismatches: 3 bulges: 1 |
pre-miRNA
ACCCCTTTAGAGGATGACTGATTTCTTTTGGTGTTCAGAGTCAATAATATTTTCTAGCACCATTTGAAATCGGTTATAGTGATTGGGGA
dot-bracket secondary structure
.((((..(.....((((((((((((...(((((((.((((...........)))))))))))...))))))))))))....)..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
ACCCCTTTAGAGGATGACTGATTTCTTTTGGTGTTCAGAGTCAATAATATTTTCTAGCACCATTTGAAATCGGTTATAGTGATTGGGGA
dot-bracket secondary structure
.((((..(.....((((((((((((...(((((((.((((...........)))))))))))...))))))))))))....)..)))).
SIMILARITIES| miRBase oan-mir-29a-1: 6e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 3e-29 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
