ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-124
source: miRBase, original name: gga-mir-124a (MI0001197)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAAGGCACGCGGTGAATGCCA miRNA* GTGTTCACAGCGGACCTTGATT mismatches: 5 bulges: 0 |
pre-miRNA
AGGCTCTGCCTCTCCGTGTTCACAGCGGACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCGGATCCTCCAGGCGGCATT
dot-bracket secondary structure
(((.(((((.(((..((((((((.(((..((((((((...........))))))))..))).))))))))..)))))))).)))............
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
AGGCTCTGCCTCTCCGTGTTCACAGCGGACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCGGATCCTCCAGGCGGCATT
dot-bracket secondary structure
(((.(((((.(((..((((((((.(((..((((((((...........))))))))..))).))))))))..)))))))).)))............
SIMILARITIES| miRBase tgu-mir-124-1: 7e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 3e-35 |
Identical with: eca-mir-124-2 from miRBase (MNEST027008) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
