ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-125
source: miRBase, original name: gga-mir-125b (MI0001175)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCCTAACTTGTGA miRNA* ACAAGTCAGGCTCTTGGGACCT mismatches: 6 bulges: 0 |
pre-miRNA
ATCAGACTTTTCCTAGTCCCTGAGACCCTAACTTGTGAGGTTTTGTAGCAACAATCACAAGTCAGGCTCTTGGGACCTAGGCGGAGGGGA
dot-bracket secondary structure
.((...(((..(((((..((..(((.(((.((((((((.(((....))).....)))))))).))).)))..))..)))))..)))..))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
ATCAGACTTTTCCTAGTCCCTGAGACCCTAACTTGTGAGGTTTTGTAGCAACAATCACAAGTCAGGCTCTTGGGACCTAGGCGGAGGGGA
dot-bracket secondary structure
.((...(((..(((((..((..(((.(((.((((((((.(((....))).....)))))))).))).)))..))..)))))..)))..))
SIMILARITIES| miRBase xtr-mir-125b-2: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 2e-33 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
