ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-130
source: miRBase, original name: gga-mir-130b (MI0001239)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGTGCAATAATGAAAGGGCGT miRNA* CCTCTTTCCCTGTTGCACTACT mismatches: 6 bulges: 0 |
pre-miRNA
GGGCGGGCTGCCCCTCTTTCCCTGTTGCACTACTGTCACGGTCGCAGCGAGCAGTGCAATAATGAAAGGGCGTCAGT
dot-bracket secondary structure
((((.....))))(((((((..(((((((((.((((..(....)..)).)).)))))))))..))))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
GGGCGGGCTGCCCCTCTTTCCCTGTTGCACTACTGTCACGGTCGCAGCGAGCAGTGCAATAATGAAAGGGCGTCAGT
dot-bracket secondary structure
((((.....))))(((((((..(((((((((.((((..(....)..)).)).)))))))))..))))))).......
SIMILARITIES| miRBase tgu-mir-130b: 1e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-130: 0.00006 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
