ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-133
source: miRBase, original name: gga-mir-133a-1 (MI0001195)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTCCCCTTCAACCAGCTGT miRNA* AGCTGGTAAAATGGAACCAAAT mismatches: 5 bulges: 0 |
pre-miRNA
CAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCATTGA
dot-bracket secondary structure
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
CAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCACCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCATTGA
dot-bracket secondary structure
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).
SIMILARITIES| miRBase oan-mir-133a: 3e-44 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 2e-30 |
Identical with: tgu-mir-133-1 from miRBase (MNEST026462) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
