ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-144
source: miRBase, original name: gga-mir-144 (MI0004996)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACAGTATAGATGATGTACTC miRNA* GGATATCATCATATACTGTAAGT mismatches: 4 bulges: 1 |
pre-miRNA
CCCGCCGCCCTGGGCTGGATATCATCATATACTGTAAGTTCACTATGAGACACTACAGTATAGATGATGTACTCCCCTGGGCTGC
dot-bracket secondary structure
...((.((((.(((..(.((((((((.(((((((((..(((.....)))....))))))))))))))))).)..))).)))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
CCCGCCGCCCTGGGCTGGATATCATCATATACTGTAAGTTCACTATGAGACACTACAGTATAGATGATGTACTCCCCTGGGCTGC
dot-bracket secondary structure
...((.((((.(((..(.((((((((.(((((((((..(((.....)))....))))))))))))))))).)..))).)))).))
SIMILARITIES| miRBase tgu-mir-144: 1e-21 PMRD no hits microPC no hits | UniProt no hits RFAM mir-144: 1e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
