ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-146
source: miRBase, original name: gga-mir-146c-2 (MI0015965)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGAACTGAATTCCATGGACTG miRNA* GTCCATGGTATTCAGTTCTCTAG mismatches: 2 bulges: 0 |
pre-miRNA
GAAGATGTGACGAATCTTGGCAGTTCCCAGCTCTGAGAACTGAATTCCATGGACTGGTTTCAATTCCATGCGTTCAGTCCATGGTATTCAGTTCTCTAGC
TTGGCTGCATCAAACTTCACAACTGCTAA
dot-bracket secondary structure
..((.(((((.........((((..((.((((..(((((((((((.(((((((((((...((......))...))))))))))).))))))))))).)))
).))))))........))))).)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
GAAGATGTGACGAATCTTGGCAGTTCCCAGCTCTGAGAACTGAATTCCATGGACTGGTTTCAATTCCATGCGTTCAGTCCATGGTATTCAGTTCTCTAGC
TTGGCTGCATCAAACTTCACAACTGCTAA
dot-bracket secondary structure
..((.(((((.........((((..((.((((..(((((((((((.(((((((((((...((......))...))))))))))).))))))))))).)))
).))))))........))))).)).....
SIMILARITIES| miRBase gga-mir-146c-1: 3e-69 PMRD no hits microPC no hits | UniProt no hits RFAM mir-146: 8e-49 |
Identical with: gga-mir-146c-1 from miRBase (MNEST025967) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
