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ABOUT THIS RECORD

ID: MNEST025980
species: Gallus gallus
miRNA family: mir-187
source: miRBase, original name: gga-mir-187 (MI0001193)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGTGTCTTGTGTTGCAGCC

miRNA*
CTACAACACAGGACATGGGA

mismatches: 1
bulges: 0

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pre-miRNA
AAACTATTGTGAGACCTCCGGCTACAACACAGGACATGGGAGCTTTTCTGAACCCTCGTGTCTTGTGTTGCAGCCAGAGGGGCACA

dot-bracket secondary structure
.......((((...((((.((((.((((((((((((((((.(.((....)).).)))))))))))))))).)))).))))..))))


SIMILARITIES
miRBase mdo-mir-187: 6e-36

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-187: 2e-42

Identical with: tgu-mir-187 from miRBase (MNEST026488)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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evidence: cloned

references

[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"




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