ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-190
source: miRBase, original name: gga-mir-190 (MI0001224)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATATGTTTGATATATTAGGT miRNA* TATATATCAAACATATTCCT mismatches: 2 bulges: 2 |
pre-miRNA
TGCAGGACTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAACATATTCCTACAGTGTCCTGCC
dot-bracket secondary structure
.(((((((.(((((..(((((((((((((((..(((((..........))))))))))))))))))))..).)))).))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
TGCAGGACTCTGTGTGATATGTTTGATATATTAGGTTGTTATTTAATCCAACTATATATCAAACATATTCCTACAGTGTCCTGCC
dot-bracket secondary structure
.(((((((.(((((..(((((((((((((((..(((((..........))))))))))))))))))))..).)))).))))))).
SIMILARITIES| miRBase mdo-mir-190a: 1e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-190: 1e-34 |
Identical with: eca-mir-190 from miRBase (MNEST027070) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
