ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-193
source: miRBase, original name: gga-mir-193a (MI0007564)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACTGGCCTACAAAGTCCCAGT miRNA* TGGGTCTTTGCGGGCGAGATGA mismatches: 5 bulges: 0 |
pre-miRNA
AGCTGAGGGCTGGGTCTTTGCGGGCGAGATGAGAGGTTCGTGTCTTCAACTGGCCTACAAAGTCCCAGTTCTCGGCT
dot-bracket secondary structure
((((((((((((((.(((((..(((.((.(((((.(....).)).))).)).)))..))))).))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, cloned, Northern
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
[2] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
AGCTGAGGGCTGGGTCTTTGCGGGCGAGATGAGAGGTTCGTGTCTTCAACTGGCCTACAAAGTCCCAGTTCTCGGCT
dot-bracket secondary structure
((((((((((((((.(((((..(((.((.(((((.(....).)).))).)).)))..))))).))))))))))))))
SIMILARITIES| miRBase tgu-mir-193b: 3e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-193: 4e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, cloned, Northern
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
[2] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
