ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-196
source: miRBase, original name: gga-mir-196-2 (MI0001190)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCATGTTGTTGG miRNA* TACAGCACGAAACTGCCTTAA mismatches: 3 bulges: 0 |
pre-miRNA
AACTGCTCTGTGGTTTAGGTAGTTTCATGTTGTTGGGGCTCCACCTTTCTCTCTACAGCACGAAACTGCCTTAATTACTTCAGTTGATATCATC
dot-bracket secondary structure
(((((....((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..))))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
AACTGCTCTGTGGTTTAGGTAGTTTCATGTTGTTGGGGCTCCACCTTTCTCTCTACAGCACGAAACTGCCTTAATTACTTCAGTTGATATCATC
dot-bracket secondary structure
(((((....((((((.((((((((((.((((((.((((...........)))).)))))).)))))))))).))))))..))))).........
SIMILARITIES| miRBase mdo-mir-196b: 2e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 1e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
