ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-8
source: miRBase, original name: gga-mir-200a (MI0001249)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACACTGTCTGGTAACGATGT miRNA* ATCTTACTAGACAGTGCTGGA mismatches: 1 bulges: 1 |
pre-miRNA
GGTCCTCTGTGGGCATCTTACTAGACAGTGCTGGATTTCTTGGATCTATTCTAACACTGTCTGGTAACGATGTTTAAAGGGTGAACC
dot-bracket secondary structure
((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
GGTCCTCTGTGGGCATCTTACTAGACAGTGCTGGATTTCTTGGATCTATTCTAACACTGTCTGGTAACGATGTTTAAAGGGTGAACC
dot-bracket secondary structure
((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).)))
SIMILARITIES| miRBase tgu-mir-200a: 1e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 4e-37 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
