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ABOUT THIS RECORD

ID: MNEST025991
species: Gallus gallus
miRNA family: mir-8
source: miRBase, original name: gga-mir-200a (MI0001249)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAACACTGTCTGGTAACGATGT

miRNA*
ATCTTACTAGACAGTGCTGGA

mismatches: 1
bulges: 1

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pre-miRNA
GGTCCTCTGTGGGCATCTTACTAGACAGTGCTGGATTTCTTGGATCTATTCTAACACTGTCTGGTAACGATGTTTAAAGGGTGAACC

dot-bracket secondary structure
((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).)))


SIMILARITIES
miRBase tgu-mir-200a: 1e-30

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-8: 4e-37

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"




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