ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-1
source: miRBase, original name: gga-mir-206 (MI0001207)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAGGAAGTGTGTGG miRNA* ACATGCTTCTTTATATCCCCATA mismatches: 2 bulges: 1 |
pre-miRNA
GAGATGACATGCTTCTTTATATCCCCATATGGATTAGGCTGCTATGGAATGTAAGGAAGTGTGTGGTTTCAGGGAG
dot-bracket secondary structure
(((((.((((((((((((((((..((((((((......))).))))).)))))))))))))))).)))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
GAGATGACATGCTTCTTTATATCCCCATATGGATTAGGCTGCTATGGAATGTAAGGAAGTGTGTGGTTTCAGGGAG
dot-bracket secondary structure
(((((.((((((((((((((((..((((((((......))).))))).)))))))))))))))).)))))......
SIMILARITIES| miRBase oan-mir-206: 3e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 9e-35 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
