ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-214
source: miRBase, original name: gga-mir-214 (MI0008208)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGCGGGAACAGACAGGCAG miRNA* GTCTGTCTACACTTGCTGTCC mismatches: 3 bulges: 0 |
pre-miRNA
GGACTGGCTGTTCGGAGTTGTCATGTGTCTGTCTGTCTACACTTGCTGTCCATAACATCCACTCACCTGTACAGCGGGAACAGACAGGCAGTCACCTGAC
AACCCAGCCT
dot-bracket secondary structure
.....((((....((.(((((((.(((.((((((((((...((((((((.((...............)).))))))))...)))))))))).))).))))
))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
GGACTGGCTGTTCGGAGTTGTCATGTGTCTGTCTGTCTACACTTGCTGTCCATAACATCCACTCACCTGTACAGCGGGAACAGACAGGCAGTCACCTGAC
AACCCAGCCT
dot-bracket secondary structure
.....((((....((.(((((((.(((.((((((((((...((((((((.((...............)).))))))))...)))))))))).))).))))
))))))))).
SIMILARITIES| miRBase cfa-mir-214: 1e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-214: 1e-56 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
