ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-219
source: miRBase, original name: gga-mir-219 (MI0001246)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGTCCAAACGCAATTCT miRNA* AATTGTGTCTGGACATCTGT mismatches: 2 bulges: 1 |
pre-miRNA
CTCTGCTCCTGATTGTCCAAACGCAATTCTTGTGCGCTGGAGCCGTACGAACCAAGAATTGTGTCTGGACATCTGTAGCAGAGAT
dot-bracket secondary structure
(((((((.(.(((.(((((.(((((((((((((((((....).))))).....))))))))))).)))))))).).)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
CTCTGCTCCTGATTGTCCAAACGCAATTCTTGTGCGCTGGAGCCGTACGAACCAAGAATTGTGTCTGGACATCTGTAGCAGAGAT
dot-bracket secondary structure
(((((((.(.(((.(((((.(((((((((((((((((....).))))).....))))))))))).)))))))).).)))))))..
SIMILARITIES| miRBase gga-mir-2964: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-219: 7e-36 |
Identical with: gga-mir-2964 from miRBase (MNEST026355) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
