ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-1654
source: miRBase, original name: gga-mir-1654-1 (MI0007386)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGGTGGAGGGAGCTGAG miRNA* CAATCACTATTACCAGCAGT mismatches: 2 bulges: 3 |
pre-miRNA
GATGTCAGTAGAAAAAATTGAGGCTTGCTGGTGGAGGGAGCTGAGCATGGCTCAATCACTATTACCAGCAGTAGAAGTTTTGATTTAAGGGATC
dot-bracket secondary structure
(((.((..((((.((((((...(((.((((((((.((((..(((((...))))).)).)).)))))))))))...))))))..)))).)).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
GATGTCAGTAGAAAAAATTGAGGCTTGCTGGTGGAGGGAGCTGAGCATGGCTCAATCACTATTACCAGCAGTAGAAGTTTTGATTTAAGGGATC
dot-bracket secondary structure
(((.((..((((.((((((...(((.((((((((.((((..(((((...))))).)).)).)))))))))))...))))))..)))).)).)))
SIMILARITIES| miRBase gga-mir-1654-2: 2e-48 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gga-mir-1654-2 from miRBase (MNEST026178) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
