ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-1662
source: miRBase, original name: gga-mir-1662 (MI0007396)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACATCATCATACTTGGGAT miRNA* CCCAAGCAGGCTGATGTCAGGC mismatches: 4 bulges: 0 |
pre-miRNA
TCTATGGGTTTGACATCATCATACTTGGGATGTATGACACAAAGTCCCAAGCAGGCTGATGTCAGGCCCAAGA
dot-bracket secondary structure
(((.((((((((((((((.(...((((((((............))))))))...).)))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
TCTATGGGTTTGACATCATCATACTTGGGATGTATGACACAAAGTCCCAAGCAGGCTGATGTCAGGCCCAAGA
dot-bracket secondary structure
(((.((((((((((((((.(...((((((((............))))))))...).)))))))))))))))))
SIMILARITIES| miRBase tgu-mir-1662: 4e-27 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
