ABOUT THIS RECORDspecies: Gallus gallus
source: miRBase, original name: gga-mir-2131 (MI0010736)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCAGAAGTGCACGGAAACAGCT miRNA* CTGTTACTGTTCTTCTGATGG mismatches: 2 bulges: 3 |
pre-miRNA
TCTCGTGGCTTCCATGCAGAAGTGCACGGAAACAGCTGTTTGCTATCGAAAAGTTGGCTGTTACTGTTCTTCTGATGGAGGCTGCTGGA
dot-bracket secondary structure
(((.(..((((((((.((((((...((((.(((((((....(((.......))).))))))).)))).))))))))))))))..).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa
references
[1] Rathjen T, Pais H, Sweetman D, Moulton V, Munsterberg A, Dalmay T, FEBS Lett. 583:1422-1426(2009)., "High throughput sequencing of microRNAs in chicken somites"
TCTCGTGGCTTCCATGCAGAAGTGCACGGAAACAGCTGTTTGCTATCGAAAAGTTGGCTGTTACTGTTCTTCTGATGGAGGCTGCTGGA
dot-bracket secondary structure
(((.(..((((((((.((((((...((((.(((((((....(((.......))).))))))).)))).))))))))))))))..).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa
references
[1] Rathjen T, Pais H, Sweetman D, Moulton V, Munsterberg A, Dalmay T, FEBS Lett. 583:1422-1426(2009)., "High throughput sequencing of microRNAs in chicken somites"
