ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-3524
source: miRBase, original name: gga-mir-3524 (MI0015376)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAATCGCAGAATGGCTGAGG miRNA* CGGACCATTCTATGATTCTCTG mismatches: 2 bulges: 2 |
pre-miRNA
CTGGATTATCTTTAAGGTCCCTACCAACCCGGACCATTCTATGATTCTCTGATTCTAAAAGTTATCACAGAATCGCAGAATGGCTGAGGCTGAAAGAGAC
ATCTGGATCCATCTGG
dot-bracket secondary structure
(..(((.((((.....(((.((..((.(((((.(((((((.(((((((.((((..........)))).))))))).)))))))))).)).))..)).)))
....))))..)))..)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"
CTGGATTATCTTTAAGGTCCCTACCAACCCGGACCATTCTATGATTCTCTGATTCTAAAAGTTATCACAGAATCGCAGAATGGCTGAGGCTGAAAGAGAC
ATCTGGATCCATCTGG
dot-bracket secondary structure
(..(((.((((.....(((.((..((.(((((.(((((((.(((((((.((((..........)))).))))))).)))))))))).)).))..)).)))
....))))..)))..)
SIMILARITIES| miRBase gga-mir-3525: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gga-mir-3525 from miRBase (MNEST026358) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"
