ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: miR-3540
source: miRBase, original name: gga-mir-3540 (MI0015394)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGTGGAAGAACAAGGCCTGC miRNA* AGGGCCTGCTTCCTCCACCT mismatches: 5 bulges: 1 |
pre-miRNA
AGGAAATGGTGGAAGAACAAGGCCTGCCCGCGAGGTAAGGGCAGGGCCTGCTTCCTCCACCT
dot-bracket secondary structure
.......((((((.(((..((((((((((.........))))).)))))..))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"
AGGAAATGGTGGAAGAACAAGGCCTGCCCGCGAGGTAAGGGCAGGGCCTGCTTCCTCCACCT
dot-bracket secondary structure
.......((((((.(((..((((((((((.........))))).)))))..))).)))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM SCARNA15: 6e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H, BMC Genomics. 10:512(2009)., "Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach"
