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ABOUT THIS RECORD

ID: MNEST026452
species: Taeniopygia guttata
miRNA family: mir-124
source: miRBase, original name: tgu-mir-124-3 (MI0013700)

Taxonomy by NCBI:
Taeniopygia guttata Taeniopygia Estrildinae Estrildidae Passeroidea Passeriformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGGCACGCGGTGAATGCCA

miRNA*
CGTGTTCACAGCGGACCTTGAT

mismatches: 4
bulges: 1

View larger
pre-miRNA
TCCCGCAAGCCCCGCTCGCCGCCTGCCCTGCTCCGAGCGGGGACAGCCCGAGCCCCTCTCTGCGTGTTCACAGCGGACCTTGATTTAATGTCCATACAAT
TAAGGCACGCGGTGAATGCCA
AGAGAGGAGC


dot-bracket secondary structure
....((...(((((((((..((.......))..)))))))))...))....((.((((((((.((((((((.(((..((((((((............)))
)))))..))).))))))))).
))))))).))



SIMILARITIES
miRBase gga-mir-124a-2: 6e-40

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-124: 2e-28

Identical with: cfa-mir-124-3 from miRBase (MNEST026688)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa

references

[1] Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li, Nature. 464:757-762(2010)., "The genome of a songbird"




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