ABOUT THIS RECORDspecies: Taeniopygia guttata
miRNA family: mir-148
source: miRBase, original name: tgu-mir-148 (MI0013693)
Taxonomy by NCBI:
Taeniopygia guttata Taeniopygia Estrildinae Estrildidae Passeroidea Passeriformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGTGCACTACAGAACTTTGT miRNA* AAAGTTCTGTGACACTCCGACT mismatches: 2 bulges: 4 |
pre-miRNA
CCCCGGCGCCGGTACCGGCGGAGGACTGGAGCCTCCGGAAGCAAAGTTCTGTGACACTCCGACTCTGGGTACGATAGCAGTCAGTGCACTACAGAACTTT
GTCTCCGGCGGC
dot-bracket secondary structure
..((..(((((....)))))..))......(((.(((((..((((((((((((.((((..(((((((.......))).))))))))...)))))))))))
)..))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li, Nature. 464:757-762(2010)., "The genome of a songbird"
CCCCGGCGCCGGTACCGGCGGAGGACTGGAGCCTCCGGAAGCAAAGTTCTGTGACACTCCGACTCTGGGTACGATAGCAGTCAGTGCACTACAGAACTTT
GTCTCCGGCGGC
dot-bracket secondary structure
..((..(((((....)))))..))......(((.(((((..((((((((((((.((((..(((((((.......))).))))))))...)))))))))))
)..))))).)))
SIMILARITIES| miRBase tgu-mir-2957: 2e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 3e-29 |
Identical with: tgu-mir-2957 from miRBase (MNEST026558) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li, Nature. 464:757-762(2010)., "The genome of a songbird"
