ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: let-7
source: miRBase, original name: cfa-let-7a-1 (MI0007989)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* TAACTATACAATCTACTGTCTTTCC mismatches: 3 bulges: 3 |
pre-miRNA
TGAGGTAGTAGGTTGTATAGTTTGGGGCTCTGCCCTGCTCTGGGTAACTATACAATCTACTGTCTTTCC
dot-bracket secondary structure
.(((..((((((((((((((((..((((........))))..)...)))))))))))))))..)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TGAGGTAGTAGGTTGTATAGTTTGGGGCTCTGCCCTGCTCTGGGTAACTATACAATCTACTGTCTTTCC
dot-bracket secondary structure
.(((..((((((((((((((((..((((........))))..)...)))))))))))))))..)))...
SIMILARITIES| miRBase eca-let-7a-2: 4e-27 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 7e-26 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
