ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: let-7
source: miRBase, original name: cfa-let-7e (MI0008004)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGGAGGTTGTATAGTT miRNA* CTATACGGCCTCCTAGCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
TGAGGTAGGAGGTTGTATAGTTGAGGAGGACACCCACGGAGATCACTATACGGCCTCCTAGCTTTCC
dot-bracket secondary structure
.(((.((((((((((((((((.((.(.((....)).).....)))))))))))))))))).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TGAGGTAGGAGGTTGTATAGTTGAGGAGGACACCCACGGAGATCACTATACGGCCTCCTAGCTTTCC
dot-bracket secondary structure
.(((.((((((((((((((((.((.(.((....)).).....)))))))))))))))))).)))...
SIMILARITIES| miRBase eca-let-7e: 2e-32 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 7e-29 |
Identical with: eca-let-7e from miRBase (MNEST026933) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
