ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-9
source: miRBase, original name: cfa-mir-9-1 (MI0008125)
SEQUENCE & STRUCTURE| miRNA TCTTTGGTTATCTAGCTGTATGA miRNA* ATAAAGCTAGATAACCGAAAGTA mismatches: 3 bulges: 0 |
pre-miRNA
TCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTA
dot-bracket secondary structure
..(((((((((((((((.((((((.((.......)))))))).)))))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTA
dot-bracket secondary structure
..(((((((((((((((.((((((.((.......)))))))).)))))))))))))))....
SIMILARITIES| miRBase eca-mir-9a: 1e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 1e-23 |
Identical with: mml-mir-9-1 from miRBase (MNEST027645) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
