ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-15
source: miRBase, original name: cfa-mir-16-1 (MI0008049)
SEQUENCE & STRUCTURE| miRNA TAGCAGCACGTAAATATTGGCG miRNA* CCAGTATTAACTGTGCTGCTGAA mismatches: 2 bulges: 1 |
pre-miRNA
TAGCAGCACGTAAATATTGGCGTTAAGATTCTAAAATTATCTCCAGTATTAACTGTGCTGCTGAA
dot-bracket secondary structure
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TAGCAGCACGTAAATATTGGCGTTAAGATTCTAAAATTATCTCCAGTATTAACTGTGCTGCTGAA
dot-bracket secondary structure
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))..
SIMILARITIES| miRBase age-mir-16: 2e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-16: 1e-27 |
Identical with: ssc-mir-16-2 from miRBase (MNEST033914) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
