ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-22
source: miRBase, original name: cfa-mir-22 (MI0008157)
SEQUENCE & STRUCTURE| miRNA AAGCTGCCAGTTGAAGAACTGT miRNA* AGTTCTTCAGTGGCAAGCTTTA mismatches: 2 bulges: 2 |
pre-miRNA
AGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGT
dot-bracket secondary structure
(((((((((((((((.((((((.((.........))))))))))))).))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AGTTCTTCAGTGGCAAGCTTTATGTCCTGACCCAGCTAAAGCTGCCAGTTGAAGAACTGT
dot-bracket secondary structure
(((((((((((((((.((((((.((.........))))))))))))).))))))))))..
SIMILARITIES| miRBase eca-mir-22: 2e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-22: 4e-27 |
Identical with: mne-mir-22 from miRBase (MNEST028181) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
