ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-27
source: miRBase, original name: cfa-mir-27b (MI0008009)
SEQUENCE & STRUCTURE| miRNA TTCACAGTGGCTAAGTTCTGC miRNA* AGAGCTTAGCTGATTGGTGAACA mismatches: 4 bulges: 2 |
pre-miRNA
AGAGCTTAGCTGATTGGTGAACAGTGACTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGC
dot-bracket secondary structure
((((((((((((....((((((((....(((...)))..))))))))..))))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AGAGCTTAGCTGATTGGTGAACAGTGACTGGTTTCCGCTTTGTTCACAGTGGCTAAGTTCTGC
dot-bracket secondary structure
((((((((((((....((((((((....(((...)))..))))))))..))))))))))))..
SIMILARITIES| miRBase eca-mir-27b: 4e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-27: 9e-22 |
Identical with: ssc-mir-27b from miRBase (MNEST033932) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
