ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-28
source: miRBase, original name: cfa-mir-28 (MI0008082)
SEQUENCE & STRUCTURE| miRNA CACTAGATTGTGAGCTCCTGGA miRNA* AAGGAGCTCACAGTCTATTGAG mismatches: 4 bulges: 0 |
pre-miRNA
AAGGAGCTCACAGTCTATTGAGTTGCCTTTCTGACTTTCCCACTAGATTGTGAGCTCCTGGA
dot-bracket secondary structure
.((((((((((((((((.((((((........))))....)).))))))))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AAGGAGCTCACAGTCTATTGAGTTGCCTTTCTGACTTTCCCACTAGATTGTGAGCTCCTGGA
dot-bracket secondary structure
.((((((((((((((((.((((((........))))....)).))))))))))))))))...
SIMILARITIES| miRBase eca-mir-28: 1e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-708: 6e-26 |
Identical with: age-mir-28 from miRBase (MNEST027492) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
