ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-29
source: miRBase, original name: cfa-mir-29b-1 (MI0008021)
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCAGTGTT miRNA* AGCTGGTTTCATATGGTGGTTTAGA mismatches: 4 bulges: 2 |
pre-miRNA
AGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTT
dot-bracket secondary structure
.((((((((((.((((((..((((((.............)))))))))))).))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AGCTGGTTTCATATGGTGGTTTAGATTTAAATAGTGATTGTCTAGCACCATTTGAAATCAGTGTT
dot-bracket secondary structure
.((((((((((.((((((..((((((.............)))))))))))).))))))))))...
SIMILARITIES| miRBase eca-mir-29b: 2e-31 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 6e-23 |
Identical with: eca-mir-29b from miRBase (MNEST026971) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
