ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-29
source: miRBase, original name: cfa-mir-29b-2 (MI0008121)
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCAGTGTT miRNA* AGCTGGTTTCACATGGTGGCTTAGA mismatches: 4 bulges: 2 |
pre-miRNA
TAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTT
dot-bracket secondary structure
).((((((((((.((((((.((.((((..............)))))))))))).))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTT
dot-bracket secondary structure
).((((((((((.((((((.((.((((..............)))))))))))).))))))))))...
SIMILARITIES| miRBase eca-mir-29b-2: 6.0E-32 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-29: 2.0E-23 |
Identical with: eca-mir-29b-2 from miRBase (MNEST026972), mml-mir-29b-2 from miRBase , hsa-mir-29b-2 from miRBase , mne-mir-29b from miRBase , ppy-mir-29b-2 from miRBase , ptr-mir-29b-2 from miRBase , sla-mir-29b from miRBase , ppa-mir-29b-2 from miRBase , ggo-mir-29b-2 from miRBase , bta-mir-29b-2 from miRBase , rno-mir-29b-2 from miRBase , mmu-mir-29b-2 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
