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ABOUT THIS RECORD

ID: MNEST026651
species: Canis familiaris
miRNA family: mir-29
source: miRBase, original name: cfa-mir-29c-1 (MI0008122)







SEQUENCE & STRUCTURE
miRNA
TAGCACCATTTGAAATCGGTTA

miRNA*
ACCGATTTCTCCTGGTGTTCAG

mismatches: 6
bulges: 0

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pre-miRNA
ACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTA

dot-bracket secondary structure
(((((((((...((((((((((((.....)))))...)))))))...)))))))))..


SIMILARITIES
miRBase cfa-mir-29c-2: 3e-27

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-29: 8e-16

Identical with: eca-mir-29c from miRBase (MNEST026973)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"




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