ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-30
source: miRBase, original name: cfa-mir-30a (MI0008000)
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTCGACTGGAAGC miRNA* TTTCAGTCGGATGTTTGCAGC mismatches: 0 bulges: 2 |
pre-miRNA
TGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAGATGGGCTTTCAGTCGGATGTTTGCAGC
dot-bracket secondary structure
(((((((((((..((((((((((((((....))).....))))))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TGTAAACATCCTCGACTGGAAGCTGTGAAGCCACAGATGGGCTTTCAGTCGGATGTTTGCAGC
dot-bracket secondary structure
(((((((((((..((((((((((((((....))).....))))))))))))))))))))))..
SIMILARITIES| miRBase ggo-mir-30a: 4e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 1e-27 |
Identical with: ppy-mir-30a from miRBase (MNEST030781) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
