ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-30
source: miRBase, original name: cfa-mir-30c-2 (MI0008001)
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTACACTCTCAGCT miRNA* CTGGGAGAAGGCTGTTTACTCT mismatches: 3 bulges: 2 |
pre-miRNA
TGTAAACATCCTACACTCTCAGCTGTGGAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACTCT
dot-bracket secondary structure
.(((((((.(((...(((((((((..............))))))))).))).)))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TGTAAACATCCTACACTCTCAGCTGTGGAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACTCT
dot-bracket secondary structure
.(((((((.(((...(((((((((..............))))))))).))).)))))))...
SIMILARITIES| miRBase lla-mir-30c: 1e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 1e-24 |
Identical with: ssc-mir-30c-2 from miRBase (MNEST033943) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
