ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: let-7
source: miRBase, original name: cfa-mir-98 (MI0008182)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAAGTTGTATTGTT miRNA* CTATACAACTTACTACTTTCCC mismatches: 2 bulges: 0 |
pre-miRNA
TGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCC
dot-bracket secondary structure
.(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TGAGGTAGTAAGTTGTATTGTTGTGGGGTAGGGATTTTAGGCCCCAATTAGAAGATAACTATACAACTTACTACTTTCCC
dot-bracket secondary structure
.(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))...
SIMILARITIES| miRBase eca-mir-98: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 2e-36 |
Identical with: eca-mir-98 from miRBase (MNEST026994) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
