ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-124
source: miRBase, original name: cfa-mir-124-1 (MI0008062)
SEQUENCE & STRUCTURE| miRNA TAAGGCACGCGGTGAATGCCA miRNA* GTGTTCACAGCGGACCTTGAT mismatches: 5 bulges: 0 |
pre-miRNA
GTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCCA
dot-bracket secondary structure
((((((((.(((..((((((((.............))))))))..))).))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
GTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCCA
dot-bracket secondary structure
((((((((.(((..((((((((.............))))))))..))).))))))))..
SIMILARITIES| miRBase tgu-mir-124-2: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 1e-26 |
Identical with: eca-mir-124 from miRBase (MNEST027007) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
