ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-124
source: miRBase, original name: cfa-mir-124-3 (MI0008061)
SEQUENCE & STRUCTURE| miRNA TAAGGCACGCGGTGAATGCCA miRNA* GTGTTCACAGCGGACCTTGAT mismatches: 5 bulges: 0 |
pre-miRNA
GTGTTCACAGCGGACCTTGATTTAATGTCCATACAATTAAGGCACGCGGTGAATGCCA
dot-bracket secondary structure
((((((((.(((..((((((((............))))))))..))).))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
GTGTTCACAGCGGACCTTGATTTAATGTCCATACAATTAAGGCACGCGGTGAATGCCA
dot-bracket secondary structure
((((((((.(((..((((((((............))))))))..))).))))))))..
SIMILARITIES| miRBase gga-mir-124a-2: 3e-27 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 8e-22 |
Identical with: gga-mir-124a-2 from miRBase (MNEST025941) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
