ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-125
source: miRBase, original name: cfa-mir-125a (MI0008005)
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCCTTTAACCTGT miRNA* AGGTGAGGTTCTTGGGAGCC mismatches: 5 bulges: 2 |
pre-miRNA
TCCCTGAGACCCTTTAACCTGTGAGGACATCCAGGGTCACAGGTGAGGTTCTTGGGAGCC
dot-bracket secondary structure
..((..(((.((((..((((((((((....))....)))))))))))).)))..))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TCCCTGAGACCCTTTAACCTGTGAGGACATCCAGGGTCACAGGTGAGGTTCTTGGGAGCC
dot-bracket secondary structure
..((..(((.((((..((((((((((....))....)))))))))))).)))..))....
SIMILARITIES| miRBase eca-mir-125a: 2e-28 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 2e-22 |
Identical with: eca-mir-125a from miRBase (MNEST027009) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
